Management and Surveillance of Parasitic and Infectious Emergencies (GS-EPI)

  • ECTS

    120 credits

  • Duration

    2 years

  • Training structure

    Faculty of Science

  • Language(s) of instruction

    French, English

Presentation

The Gestion et Surveillance des Emergences Parasitaires et Infectieuses - GS-EPI (Management and Surveillance of Parasitic and Infectious Emergencies) course is part of the Eco-Epidemiology master's degree, which aims to train experts capable of meeting the challenges posed by contemporary epidemiological phenomena.

Epidemics and emerging diseases linked to pathogens (viruses, bacteria, fungi, eukaryotic parasites) have been on the increase in recent decades. This phenomenon is the result of complex, multiple factors of varied origins: human density(s), degradation of natural ecosystems, degradation of biodiversity, overexploitation, intensive livestock farming, urbanization, artificialization of environments, climate change, pollution(s), globalization of human and commercial exchanges, inappropriate use of antibiotics, ill-adapted care, reduced vaccination coverage, poverty...

The study or management of these epidemic phenomena therefore requires the involvement of a variety of skills and different levels of analysis, and thus an integrative, multi-disciplinary approach (ecology, evolutionary biology, microbiology, parasitology, statistics, computer science, geomatics, geography, as well as sociology, economics, anthropology, etc.). The eco-evolutionary perspective facilitates this synthesis by placing analyses of underlying biological phenomena in population, spatial and temporal dimensions.

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Objectives

The GS-EPI pathway is designed to train future managers in the prevention, surveillance and/or control of epidemics and emerging infectious and parasitic diseases, integrating eco-environmental, health and social-economic data specific to each intervention context.

 The "multi-disciplinary and integrative scientific approach" that characterizes the training program, combined with a multi-scale approach to the analysis of intervention contexts (global, regional, local), enables future experts to propose the "enlightened" management needed to meet the challenges of our contemporary societies.

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Know-how and skills

Graduates of the GS-EPI program in the Eco-EPI specialization are able to set up and implement integrated management or surveillance programs based on the identification of factors leading to the emergence of parasitic and infectious diseases, i.e. :

  • characteristics of ecological cycles and transmission dynamics
  • evolutionary and molecular mechanisms favoring epidemics, emergence and/or host changes
  • eco-environmental factors favoring epidemics and/or emergencies
  • socio-economic factors favouring epidemics and/or emergencies
  • the relative risks associated with each of these factors in each case of epidemic and/or emergence

 

To carry out this identification, which is specific to each management or monitoring context, they apply their disciplinary knowledge in various fields such as

  • biological and ecological sciences (including evolutionary biology) focusing on pathogen-induced diseases
  • mathematical sciences (statistics and modeling) and computer sciences focused on the collection and analysis of epidemiological data (databases, GIS, etc.)
  • applied human sciences focusing on emergence, risk factors and management: sociology, economics, political governance, law (through organizations and institutions), risk identification and management...

To establish and implement management or monitoring programs,

  • They can independently implement a rational and relevant organization, and apply it to a specific context, integrating information of various kinds within a rigorous scientific approach.
  • project management and team coordination skills
  • They know how to interact and communicate with a variety of collaborators: epidemiological or specialist researchers, decision-makers or elected representatives, stakeholders or community representatives at different levels of civil society (breeders, hunters, patients, etc.), field workers, etc.
  • They are able to disseminate results to different audiences (stakeholders, decision-makers, etc.).
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International dimension

The Eco-Epidemiology of Animal and Human Pathogens Comprehensive and Utilitarian Resources -EpiCURe project (Call for projects Take Off #3: Cursus - ACCOMPANYING THE TRANSFORMATION AND/OR CREATION OF CURSUSES), based on the complete pedagogical framework of the M1 and M2 programs, aims to give international visibility to the Eco-Epidemiology training program . It will enable us to develop partnerships with foreign universities and institutions.

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Organization

Knowledge control

Depending on the teaching unit: Final assessment, continuous assessment, oral. Projects and internships are assessed on the basis of specific continuous assessment methods: a written report/thesis and an oral presentation before a jury.

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Special features

  • M1 specific to 4th-year research pharmacy students, to focus training on skills not covered in their previous curriculum
  • M2 apprenticeship (currently being set up and awaiting approval): alternating on-campus study periods with internship periods.
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Open on a sandwich basis

Contract type

Apprenticeship contract, Professionalization contract

in preparation

Opening planned if approved, in September 2022

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Internships, tutored projects

Internship

Mandatory

Length of internship

3 months in M1, 5 to 6 months in M2

Internship abroad

Possible

Duration of internship abroad

3 months in M1, 5 to 6 months in M2

An internship of 3 to 4 months is offered and recommended as early as M1, if possible in the world of applied or finalized research, in order to promote learning of the scientific approach and training through research. An in-depth tutored project is offered as an alternative to the first-year internship for students who need to deepen their knowledge and/or consolidate their approach and ability to synthesize, in order to better prepare for M2 and the end-of-study internship.

            The end-of-study internship in management or monitoring structures (national or international), in international organizations, NGOs, research bodies or institutions, or even health-related companies, is compulsory in M2 for a period of 5 to 6 months, in the student's chosen field of specialization.

 

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Program

Year 1 is mainly a common year for the two courses in the specialization, with a predominantly common core curriculum in M1 semester 1 (26 ECTS/30) and a free option to explore specific fields and issues in greater depth.

 The choice of pathway is made as early as semester 2 of M1, with the choice of an orientation option providing more in-depth elements in the management or epidemiological surveillance approach. It will also be prepared by the choice of theme for the M1 internship or Advanced Tutored Project.

The M2 GS-EPI year comprises the following courses

  • Common with the EI-EPI pathway: project management, topical issues concerning the eco-epidemiology of infectious and parasitic diseases (compulsory), Transmission: Case study (optional)
  • In-depth training in risk analysis and monitoring
  • A deeper understanding of the sociological and institutional contexts of management or monitoring
  • Specialization in one of the key areas of eco-epidemiology (see below)
  • Application to conservation, resource management or risk management (shared with other mentions)
  • More in-depth knowledge of applied humanities or bioinformatics tools, or knowledge of evolutionary bio-eco sciences (shared with other fields)

            Four main areas of specialization are possible. These specializations are not hermetically sealed themes, but present interfaces. They are

  • Zoonoses and animal diseases
  • Vector-borne diseases
  • Global changes
  • Artificialization, modern technologies and therapeutics

This specialization is developed as early as M1 S2, during thematic projects, the internship or the Advanced Tutored Project. It will be deepened by the choice of courses in M2S3 and the M2 internship.

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Select a program

  • Study of variability

    4 credits
  • Pathogens: from viruses to helminths

    4 credits
  • Description and inference

    2 credits
  • Issues and challenges in disease epidemiology

    4 credits
  • Information systems and databases

    4 credits
  • Ecology Keys

    2 credits
  • CHOICE S1

    4 credits
    • Your choice: 1 of 4

      •  Phylogeny and Evolution

      • Food risk

        4 credits
        • Food risk 1

          2 credits
        • Food risk 2

          2 credits
      • Water and Public Health

      • Complementary skills

        4 credits
  • Ecology and Evolution of Microorganisms and Parasitism

    6 credits
  • Epidemiology tools

    2 credits
  • Longitudinal, cross-sectional and epidemiological analyses

    4 credits
  • Emergence: Eco-epidemiological contexts and mechanisms

    8 credits
  • CHOICE S2

    14 credits
    • CHOICE 3

      4 credits
      • Your choice: 1 of 7

        • Public health and prevention

          4 credits
        • Health Policy and Public Health

        • Evolutionary genomics

          4 credits
        • Evolutionary ecology

          4 credits
        • EXDIM: Multidimensional data mining

          4 credits
        • Alignment and Phylogeny

          4 credits
        • Choice 5

          4 credits
          • Bioinformatics Learning Lab

            2 credits
          • Biological information

            2 credits
    • CHOICE 4

      10 credits
      • Your choice: 1 of 2

        • Extended tutored project

          10 credits
        • Internship

          10 credits
  • Preparation for internship or in-depth tutored project

    2 credits

M2 -Management and Surveillance of Parasitic and Infectious Emergencies GS-EPI

See the complete page of this course

  • Choice 2

    4 credits
    • Choice: 1 of 3

      • Choice 2-1

        4 credits
        • Choice: 1 of 3

          • Sustainable use of animal resources Hunting

            2 credits
          • Methods and analysis of SHS surveys

            2 credits
          • Managing a participatory science project

            2 credits
      • Spatial data

        4 credits
      • Historical approaches to natural hazards/expertise feedback

        4 credits
  • Institutional context and management of emergence

    2 credits
  • Project management in basic and applied epidemiology

    10 credits
  • Choice 1

    8 credits
    • Your choice: 1 of 4

      • Arboviroses

        4 credits
      • Pathogen-carrying water

        4 credits
      • Using nature: from domestication to modern practices

        4 credits
      • Care, Technology and Artificialization

        4 credits
  • Emergence and Company

    2 credits
  • News from Emergence II (club newspaper)

    2 credits
  • Risks, risk analysis and monitoring

    2 credits
  • GS or App end-of-study internship

    26 credits
  • Professionalization and preparation for internships

    4 credits

M2 -Management and Surveillance of Parasitic and Infectious Emergencies GS-EPI - LEARNING

See the complete page of this course

  • Learning project

  • Institutional context and management of emergence

    2 credits
  • Project management in basic and applied epidemiology

    10 credits
  • Choice 2

    • Your choice: 1 of 4

      • Transmission: Case study

        2 credits
      • Managing a participatory science project

        2 credits
      • Methods and analysis of SHS surveys

        2 credits
      • Sustainable use of animal resources Hunting

        2 credits
  • Choice 1

    8 credits
    • Your choice: 1 of 4

      • Arboviroses

        4 credits
      • Pathogen-carrying water

        4 credits
      • Using nature: from domestication to modern practices

        4 credits
      • Care, Technology and Artificialization

        4 credits
  • Emergence and Company

    2 credits
  • News from Emergence II (club newspaper)

    2 credits
  • Risks, risk analysis and monitoring

    2 credits
  • EU choice

    4 credits
    • Public health and prevention

      4 credits
    • Health Policy and Public Health

    • EXDIM: Multidimensional data mining

      4 credits
    • Choice 5

      4 credits
      • Bioinformatics Learning Lab

        2 credits
      • Biological information

        2 credits
  • GS or App end-of-study internship

    26 credits

Admission

Access conditions

M1 entry: a bachelor's degree or equivalent

M2 entry: one year of Master 1 or equivalent

see target audience for more information

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How to register

Applications can be submitted on the following platforms: 

French & European students :

International students from outside the EU: follow the "Études en France" procedure: https: //pastel.diplomatie.gouv.fr/etudesenfrance/dyn/public/authentification/login.html

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Target audience

Opening up this course to young people from basic science courses (Bachelor's degrees), health courses (especially pharmacy, but also human and veterinary medicine), as well as to health monitoring personnel in continuing education, and to students from geography and planning courses (under certain conditions), contributes to building a common culture among players in this field, in response to the need for interdisciplinary connections.

M1 entry:

  • of students from
    • bachelor's degrees in Life Sciences or Life and Earth Sciences, in particular Ecology and Organismal Biology, Organismal and Population Biology, Environmental Sciences, Microbiology, Cell Biology and Physiology,
    • Health Sciences bachelor's degrees 
    • Biology and Humanity licenses (Catholic universities)....,
  • students in their 4th year of pharmacy or human medicine.
  • Secondarily, students from bachelor's degrees in Geography and Planning, Social Sciences, Health and Social Sciences. Their integration will be validated on the basis of additional elements in their file indicating their ability to rapidly acquire certain elements of the so-called "hard" sciences.

M2 entry:

  • by right, students who have completed the M1 Eco-EPI
  • students with an M1 in Biology, Biology-Health, Health, Life Sciences, Public Health, Microbiology, Nutrition and Food Sciences, Biology-Agro Sciences, Agrosciences, Environment, Territories, Landscape, Forest, Biodiversity, Ecology and Evolution, Risks and Environment, Teaching, Education and Training Professions (MEEF),2nd degree. Their integration will be assessed on the basis of the M1 prerequisites essential for continuation in M2 GS-EPI, the coherence between their training project and the objectives of the pathway, and on the basis of potential vacancies in relation to intake capacity.
  • 6th year veterinary students with a professional project focused on "one health" epidemiological surveillance (under the same conditions as those listed above)
  • Continuing education for pharmacists and medical interns in response to the need for integrative skills among future healthcare professionals
  • Continuing training for health monitoring staff in eco-epidemiology.

 

To enter the M2 GS-EPI apprenticeship program (application in progress - subject to approval; scheduled to open in September 2022)

  • Priority to M1 Eco-EPI students
  • students from M1 programs (listed above)
  • 6th year veterinary students

 

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Capacity

Necessary prerequisites

Imposed by the entry level (see Target Audience), the specific modalities linked to initial, continuing or sandwich training. This mainly involves :

  • a bachelor's degree in biological and environmental sciences, or its equivalent, for entry into M1;
  • Master's level 1 in biological and peri-biological sciences, or their equivalent, in M2, including fundamental knowledge of pathogens or diseases of infectious and parasitic origin.

For entry into M1, "knowledge" at L3 level or equivalent in at least 2 of these fields.

  • Organismal biology
  • Physiology
  • Cellular and molecular biology
  • Ecology
  • Evolutionary biology
  • Parasitology
  • Microbiology

For entry into M2, knowledge at M1 level or equivalent is required in the biology of the main pathogenic organisms and in at least 2 of the following fields

  • Infectious and parasitic pathologies 
  • Antibiotic therapy and anti-infectious drugs
  • General ecology
  • Parasitic ecology
  • Microbial ecology
  • Health ecology
  • Evolutionary biology and/or conservation biology
  • Parasitology
  • Microbiology
  • Vector Entomology
  • Descriptive epidemiology (statistics)
  • Modeling
  • Health risk management
  • Public health policy
  • Epidemiological surveillance

 

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Recommended prerequisites

For entry into M1,

  • L1-L2 level knowledge in at least 1 of these fields
  1. Bio-Statistics
  2. IT (database, GIS)
  • Basic knowledge, even if self-taught, in 1 or 2 of the following areas can be invaluable
  1. Breeding systems
  2. Economy
  3. Sociology
  4. Anthropology
  5. Regional planning
  6. Environmental management
  7. Conservation biology

 

For entry into M2,

  • M1-level knowledge in at least 1 of these fields (initial training)
  1. Bio-Statistics
  2. IT (database, GIS)
  • Knowledge (professional experience, internships, studies, extracurricular experience) in 1 or 2 of the following areas
  1. Human or veterinary health
  2. Livestock breeding and production systems
  3. Economics and trade globalization
  4. Participatory science
  5. Sociology /Anthropology
  6. Development aid
  7. Humanitarian aid
  8. Regional planning
  9. Environmental management

 

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And then

Further studies

Although this is not the main objective of the course, it is possible in the context of theses at the disciplinary interfaces between health ecology and sociology, in applied or targeted research.

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Studying abroad

the same opportunities as in France, on interface theses and management applications.

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Professional integration

Careers: Expert eco-epidemiologist, eco-epidemiological monitoring officer, health watch officer, surveillance network coordinator (including animal diseases), epidemiological risk management consultant...

Insertion: National or regional management and surveillance bodies / Health watch institutes (in France: ANSES, DGAI, DDPP, SPF...or abroad; ECDC...), International bodies, Surveillance networks, Groupements de Défense Sanitaire (GDS)...

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