Management and Surveillance of Parasitic and Infectious Emergencies (GS-EPI)

  • ECTS

    120 credits

  • Duration

    2 years

  • Training structure

    Faculty of Science

  • Language(s) of instruction

    French, English

Presentation

The Management and Surveillance of Parasitic and Infectious Emergencies (GS-EPI) program is part of the Eco-Epidemiology master's degree program Eco-EPI, which aims to train experts capable of meeting the challenges posed by contemporary epidemiological phenomena.

Indeed, epidemics and emergences of diseases related to pathogens (viruses, bacteria, fungi, eukaryotic parasites) have been increasing over the last decades. This phenomenon is the result of complex and multiple factors of various origins: human density(s), degradation of natural ecosystems, degradation of biodiversity, overexploitation, intensive breeding, urbanization, artificialization of environments, climate change, pollution(s), globalization of human and commercial exchanges, inappropriate use of antibiotics, ill-adapted health care, decrease in vaccination coverage, poverty...

The study or management of these epidemic phenomena therefore requires the involvement of various skills and different levels of analysis, thus an integrative and multidisciplinary approach (Ecology, Evolutionary Biology, Microbiology, Parasitology, Statistics, Computer Science, Geomatics, Geography but also Sociology, Economics, Anthropology?) The eco-evolutionary perspective facilitates this synthesis by placing the analyses of the underlying biological phenomena in population, spatial and temporal dimensions.

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Objectives

The GS-EPI course is designed to train future managers to implement prevention, surveillance and/or control of epidemics and emergences of infectious and parasitic origin, by integrating eco-environmental, health and social-economic data specific to each intervention context

 The "multidisciplinary and integrative scientific approach" that characterizes the training program, combined with the multi-scale analysis of intervention contexts (global, regional, local), enables future experts to propose the "enlightened" management necessary to meet the challenges of our contemporary societies.

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Know-how and skills

Graduates of the GS-EPI track of the Eco-EPI major are able to establish and implement management or surveillance programs by integrating based on the identification of emergence factors of parasitic and infectious diseases, namely:

  • characteristics of ecological cycles and transmission dynamics
  • evolutionary and molecular mechanisms favoring epidemics, emergence and/or host changes
  • eco-environmental factors favouring epidemics and/or emergencies
  • Socio-economic factors favouring epidemics and/or emergencies
  • the relative risks associated with each of these factors in each outbreak and/or emergence

 

To carry out this identification, which is specific to each management or monitoring context, they apply their disciplinary knowledge in various fields such as

  • in biological and ecological sciences (including evolutionary biology) focusing on pathogen-induced diseases
  • mathematical sciences (statistics and modeling) and computer science focused on the collection and analysis of epidemiological data (databases, GIS, etc.)
  • in applied human sciences focused on the factors of emergence, risks and management: sociology, economics, political governance, law (through organizations and institutions), identification and management of risks...

To establish and implement management or monitoring programs,

  • they know how to implement a rational and relevant organization in an autonomous way, and apply it to a specific context, by integrating information of various kinds, in a rigorous scientific approach.
  • they master project management and team coordination
  • They know how to interact and communicate with various collaborators: epidemiological or specialized researchers, decision-makers or elected officials, representatives of stakeholders or communities at different levels of civil society (breeders, hunters, patients, etc.), field workers, etc.
  • They are able to disseminate results to different audiences (stakeholders, decision-makers, etc.)
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International dimension

The Eco-Epidemiology of Animal and Human Pathogens Comprehensive and Utilitarian Resources -EpiCURe project (Call for projects Take Off #3: Cursus - ACCOMPANYING THE TRANSFORMATION AND/OR CREATION OF CURSUSES), concretely based on the complete pedagogical framework of the M1 and M2, aims to give international visibility to the Eco-Epidemiology training. It will allow the development of partnerships with foreign universities and institutions.

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Organization

Knowledge control

According to the teaching units: Final assessment, continuous assessment, oral. The UE projects and internships are evaluated according to specific continuous assessment methods: a written report/thesis and an oral presentation before a jury.

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Special arrangements

  • M1 specific to 4th year pharmacy students, research stream, to focus training on skills not covered in their previous curriculum
  • M2 apprenticeship (in progress and awaiting validation): alternating periods of study on campus/ periods of internship
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Open in alternation

Type of contract

Apprenticeship contract, Professionalization contract

in preparation

Opening envisaged if validated, in September 2022

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Internships, tutored projects

Internship

Mandatory

Duration of the course

3 months in M1, 5 to 6 months in M2

Internship abroad

Possible

Duration of the internship abroad

3 months in M1, 5 to 6 months in M2

An internship of 3 to 4 months is proposed and recommended as early as the first year of the program, if possible in the world of applied or finalized research in order to promote the learning of the scientific approach and training through research. An in-depth tutored project is offered as an alternative to the first-year internship to students who need to deepen their knowledge and/or consolidate their approach and ability to synthesize, in order to better prepare for the second year of study and the final internship.

            The end-of-study internship in management or monitoring structures (national, international), in international organizations, NGOs, in research organizations or institutions, or even in health-related companies, is compulsory in M2 for a period of 5 to 6 months, in the field of specialization chosen by the student.

 

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Program

Year 1 is mainly a common year for the two courses of the mention: it presents a very common core in M1 semester 1 (26 ECTS/ 30) with a free option allowing to explore fields and to deepen issues.

 The choice of pathway is made in semester 2 of M1 by choosing an orientation option that provides more in-depth elements in the management or epidemiological surveillance approach. It will also be prepared by the choice of the theme of the M1 internship or Advanced Tutorial Project.

The M2 GS-EPI year is divided into the following courses

  • Common with the EI-EPI pathway: project management, current topics concerning the eco-epidemiology of infectious and parasitic diseases (mandatory), Transmission: Case study (optional)
  • In-depth analysis of risks and monitoring
  • A deeper understanding of the sociological and institutional contexts of management or monitoring
  • Specialization in one of the key areas of eco-epidemiology (see below)
  • Application to conservation, resource management or risk management (shared with other mentions)
  • Deepening in Applied Human Sciences or Bioinformatics tools, or in knowledge of evolutionary bio-eco sciences (shared with other mentions)

            Four main fields of specialization are possible. These specializations are not hermetic themes, but present interfaces. They are

  • Zoonoses and animal diseases
  • Vector-borne diseases
  • Global Changes
  • Artificialization, Technologies and Modern Therapeutics

This specialization is worked on as early as M1 S2 during thematic projects, the internship or the Advanced Tutored Project. It will be deepened by the choice of courses in M2S3 and the M2 internship

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Select a program

  • Study of variability

    4 credits
  • Pathogenic organisms: from viruses to helminths

    4 credits
  • Description and inference

    2 credits
  • Problems and issues in disease epidemiology

    4 credits
  • Information system and databases

    4 credits
  • Ecology Keys

    2 credits
  • CHOICE S1

    4 credits
    • Your choice: 1 of 4

      •  Phylogeny and Evolution

      • Food risk

        4 credits
        • Food risk 1

          2 credits
        • Food risk 2

          2 credits
      • Water and Public Health

      • Complementary skills

        4 credits
  • Ecology and Evolution of Microorganisms and Parasitism

    6 credits
  • Epidemiology tools

    2 credits
  • Longitudinal, cross-sectional and epidemiological analyses

    4 credits
  • Emergence: Eco-epidemiological contexts and mechanisms

    8 credits
  • CHOICE S2

    14 credits
    • CHOICE 3

      4 credits
      • Choice of 1 of 7

        • Public health and prevention

          4 credits
        • Health Policy and Public Health

        • Evolutionary genomics

          4 credits
        • Evolutionary ecology

          4 credits
        • EXDIM: Multidimensional Data Mining

          4 credits
        • Alignment and Phylogeny

          4 credits
        • Choice 5

          4 credits
          • Bioinformatics Learning Lab

            2 credits
          • Biological information

            2 credits
    • CHOICE 4

      10 credits
      • Your choice: 1 of 2

        • In-depth tutored project

          10 credits
        • Internship

          10 credits
  • Preparation for the internship or in-depth tutored project

    2 credits

M2 - Management and Surveillance of Parasitic and Infectious Emergencies GS-EPI

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  • Choice 2

    4 credits
    • Choice of 1 of 3

      • Choice 2-1

        4 credits
        • Choice of 1 of 3

          • Sustainable exploitation of animal resources hunting

            2 credits
          • Methods and analysis of surveys in SHS

            2 credits
          • Managing a participatory science project

            2 credits
      • Spatial data

        4 credits
      • Historical approaches to natural hazards/expertise feedback

        4 credits
  • Institutional context and management of the emergence

    2 credits
  • Project management in basic and applied epidemiology

    10 credits
  • Choice 1

    8 credits
    • Your choice: 1 of 4

      • Arboviroses

        4 credits
      • Water as a vector of pathogens

        4 credits
      • Use of nature: from domestication to modern practices

        4 credits
      • Care, Technology and Artificialization

        4 credits
  • Emergence and Society

    2 credits
  • News of the emergence II (club newspaper)

    2 credits
  • Risks, Risk Analysis and Monitoring

    2 credits
  • End of study internship GS or App

    26 credits
  • Professionalization and preparation for the internship

    4 credits

M2 - Management and Surveillance of Parasitic and Infectious Emergencies GS-EPI - LEARNING

See the complete page of this course

  • Learning Project

  • Institutional context and management of the emergence

    2 credits
  • Project management in basic and applied epidemiology

    10 credits
  • Choice 2

    • Your choice: 1 of 4

      • Transmission: Case study

        2 credits
      • Managing a participatory science project

        2 credits
      • Methods and analysis of surveys in SHS

        2 credits
      • Sustainable exploitation of animal resources hunting

        2 credits
  • Choice 1

    8 credits
    • Your choice: 1 of 4

      • Arboviroses

        4 credits
      • Water as a vector of pathogens

        4 credits
      • Use of nature: from domestication to modern practices

        4 credits
      • Care, Technology and Artificialization

        4 credits
  • Emergence and Society

    2 credits
  • News of the emergence II (club newspaper)

    2 credits
  • Risks, Risk Analysis and Monitoring

    2 credits
  • Choice of EU

    4 credits
    • Public health and prevention

      4 credits
    • Health Policy and Public Health

    • EXDIM: Multidimensional Data Mining

      4 credits
    • Choice 5

      4 credits
      • Bioinformatics Learning Lab

        2 credits
      • Biological information

        2 credits
  • End of study internship GS or App

    26 credits

Admission

Conditions of access

At the entrance to M1: a bachelor's degree or similar

At the entrance to M2: one year of Master 1 or equivalent

see target audience for more information

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How to register

Applications are made on the following platforms: 

French & European students:

International students from outside the EU: follow the "Studies in France" procedure: https: //pastel.diplomatie.gouv.fr/etudesenfrance/dyn/public/authentification/login.html

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Target audience

The opening of this course to young people from basic scientific courses (Bachelor's degrees), health courses (especially pharmacy, but also human and veterinary medicine), as well as to staff from health monitoring services in continuing education and to students from courses in geography and planning (under certain conditions) contributes to the construction of a common culture among the actors in this field, in response to the necessary interdisciplinary connections.

At the entrance of the M1 :

  • of students from
    • Life Sciences or Life and Earth Sciences degrees, in particular the following courses: Ecology and Biology of Organisms, Biology of Organisms and Populations, Environmental Sciences, Microbiology, Cell Biology and Physiology,
    • Health Sciences licenses 
    • Biology and Humanity licenses (Catholic universities)....,
  • 4th year pharmacy or human medicine students.
  • More secondarily, students with a degree in Geography and Planning, Social Sciences, Health and Social Sciences. Their integration will be validated according to additional elements of their file indicating their capacities to quickly acquire certain elements of so-called "hard" sciences.

Upon entering M2:

  • by right, students having acquired the M1 Eco-EPI
  • students in reorientation, coming from a M1 Biology, Biology-Health, Health, Life Sciences, Public Health, Microbiology, Nutrition and Food Sciences, Biology-Agro Sciences, Agrosciences, Environment, Territories, Landscape, Forest, Biodiversity, Ecology and Evolution, Risks and Environment, Teaching, Education and Training (MEEF),2nd degree. Their integration will be evaluated on the basis of the M1 prerequisites essential for continuation in M2 GS-EPI, the coherence between their training project and the objectives of the course, and according to the potential vacancies in relation to the reception capacities
  • 6th year veterinary students with a professional project focused on "one health" epidemiological surveillance (under the same conditions as those listed above)
  • In continuing education, pharmacists, physicians in internship in response to the need for integrative skills of future health professionals
  • in continuing education, health monitoring service personnel in eco-epidemiology.

 

At the entrance to the M2 GS-EPI apprenticeship program (application in progress - subject to validation; opening planned for September 2022)

  • Priority given to M1 Eco-EPI students
  • students from M1 (listed above)
  • 6th year veterinary students

 

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Capacity

Necessary pre-requisites

Imposed by the level of entry (see Target audience), the specific modalities related to initial, continuing or sandwich training. It is therefore mainly a question of :

  • a bachelor's degree in biological and environmental sciences, or its equivalent, for entry into M1;
  • Master's level 1 in biological and peri-biological sciences, or their equivalent, in M2, including in this case fundamental knowledge of pathogens or diseases of infectious and parasitic origin.

For entry into M1, "knowledge" at the L3 level or equivalent in at least two of these fields

  • Biology of organisms
  • Physiology
  • Cellular and molecular biology
  • Ecology
  • Evolutionary biology
  • Parasitology
  • Microbiology

For entry into M2, knowledge of M1 level or equivalent is required in Biology of the main pathogenic organisms and in at least 2 of the following fields

  • Pathologies of infectious and parasitic origin 
  • Antibiotic therapy and anti-infectious drugs
  • General ecology
  • Parasitic ecology
  • Microbial ecology
  • Health ecology
  • Evolutionary biology and/or conservation biology
  • Parasitology
  • Microbiology
  • Vector Entomology
  • Descriptive epidemiology (statistics)
  • Modeling
  • Health risk management
  • Public health policy
  • Epidemiological surveillance

 

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Recommended prerequisites

For entry into M1,

  • L1-L2 level knowledge in at least 1 of these areas
  1. Bio-Statistics
  2. Computer science (database, GIS)
  • Basic knowledge, even self-taught, in 1 or 2 of the following areas can be valuable
  1. Breeding systems
  2. Economy
  3. Sociology
  4. Anthropology
  5. Territorial planning
  6. Environmental management
  7. Conservation Biology

 

For entry into M2,

  • M1 level knowledge in at least 1 of these fields (Initial training)
  1. Bio-Statistics
  2. Computer science (database, GIS)
  • Knowledge (professional experience, internships, studies, extra-academic experience) in 1 or 2 of the following areas
  1. Human or veterinary health
  2. Livestock and animal production systems
  3. Economy and trade globalization
  4. Participatory science
  5. Sociology /Anthropology
  6. Development assistance
  7. Humanitarian aid
  8. Territorial planning
  9. Environmental management

 

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And then

Further studies

Although not the main objective of the program, it is possible to do theses at the disciplinary interfaces between health ecology and sociology, in applied or targeted research.

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Continuing your studies abroad

same possibilities as in France, on interface theses and with the objectives of application to the management

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Professional integration

Professions: Expert eco-epidemiologist, eco-epidemiological monitoring officer, health watch officer, surveillance network coordinator (including animal diseases), consultant in epidemiological risk management, etc.

Insertion: National or regional management and surveillance bodies / Health watch institutes (in France: ANSES, DGAI, DDPP, SPF...or abroad; ECDC...), International bodies, Surveillance networks, Health Defence Groups (GDS)...

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