• Study level

    BAC +2

  • ECTS

    2 credits

  • Component

    Faculty of Science

Description

1- Linux basics (1.5h CM + 3hTD) : Basic commands to navigate under Linux and understand the logic of this language. Small information extraction exercises in bash/shell. Element used to analyze alignment files.

2- Database (3h CM + 4,5hTD): knowledge of the main bibliographic and biological databases (NCBI, Ensembl, Galaxie...). Relevant and efficient queries, exploitation, sorting, description of different formats.

3- Sequence analysis (1.5hCM + 4.5H TD): Alignment and comparison of sequences with a short introduction to phylogeny (dot plot, Blast ...).

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Objectives

- Fundamentals of today's essential biological computing tools

- Learn to use a common query language (basics)

- Analysis and extraction of biological data made available to the scientific community on the web

- Research scientific information and biological data to understand a project

 

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Necessary prerequisites

PIX certification (L1-S2 or L2-S3)

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